# single-cell-rna-qc

> Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based f…

Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis.

- Type: Skill
- Made by: anthropics
- Category: Research
- Formats: Skills
- Version: 646169d
- Source: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc
- Page: https://pluginboard.ai/skills/single-cell-rna-qc-anthropics

## Works with

- ChatGPT
- Claude
- Gemini
- GitHub Copilot
- Cursor
- Claude Code
- Codex
- Antigravity
- Gemini CLI
- Replit
- OpenClaw
- OpenCode
- Hermes Agent

## Install

### ChatGPT

In ChatGPT: Download the single-cell-rna-qc folder and zip it, then Plugins → Skills → Create → Upload from your computer. Business and Enterprise plans.

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc

### Claude

In Claude (web or desktop): Download the single-cell-rna-qc folder and zip the folder itself, then upload it in Customize → Skills.

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc

### Gemini

In Gemini: Download the single-cell-rna-qc folder, then at gemini.google.com click Customize → Skills → Create → Upload and pick the folder (or a .zip of it).

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc

### GitHub Copilot

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/single-cell-rna-qc ~/.copilot/skills/single-cell-rna-qc
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc

### Cursor

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/single-cell-rna-qc ~/.cursor/skills/single-cell-rna-qc
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc

### Claude Code

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/single-cell-rna-qc ~/.claude/skills/single-cell-rna-qc
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc

Or all of Bio Research, in Claude Code:

```text
/plugin marketplace add anthropics/knowledge-work-plugins
/plugin install bio-research@knowledge-work-plugins
```

### Codex

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/single-cell-rna-qc ~/.agents/skills/single-cell-rna-qc
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc

### Antigravity

In Antigravity: Copy the single-cell-rna-qc folder into ~/.gemini/config/skills (Antigravity app and IDE) or ~/.gemini/antigravity-cli/skills (Antigravity CLI).

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc

### Gemini CLI

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/single-cell-rna-qc ~/.gemini/skills/single-cell-rna-qc
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc

### Replit

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/single-cell-rna-qc .agents/skills/single-cell-rna-qc
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc

### OpenClaw

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/single-cell-rna-qc ~/.openclaw/skills/single-cell-rna-qc
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc

### OpenCode

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/single-cell-rna-qc ~/.config/opencode/skills/single-cell-rna-qc
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc

### Hermes Agent

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/single-cell-rna-qc ~/.hermes/skills/single-cell-rna-qc
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/single-cell-rna-qc

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From Pluginboard (https://pluginboard.ai).