# nextflow-development

> Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data.

Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.

- Type: Skill
- Made by: anthropics
- Category: Research
- Formats: Skills
- Version: 32b69fc
- Source: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development
- Page: https://pluginboard.ai/skills/nextflow-development

## Works with

- ChatGPT
- Claude
- Gemini
- GitHub Copilot
- Cursor
- Claude Code
- Codex
- Antigravity
- Gemini CLI
- Replit
- OpenClaw
- OpenCode
- Hermes Agent

## Install

### ChatGPT

In ChatGPT: Download the nextflow-development folder and zip it, then Plugins → Skills → Create → Upload from your computer. Business and Enterprise plans.

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development

### Claude

In Claude (web or desktop): Download the nextflow-development folder and zip the folder itself, then upload it in Customize → Skills.

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development

### Gemini

In Gemini: Download the nextflow-development folder, then at gemini.google.com click Customize → Skills → Create → Upload and pick the folder (or a .zip of it).

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development

### GitHub Copilot

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/nextflow-development ~/.copilot/skills/nextflow-development
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development

### Cursor

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/nextflow-development ~/.cursor/skills/nextflow-development
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development

### Claude Code

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/nextflow-development ~/.claude/skills/nextflow-development
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development

Or all of Bio Research, in Claude Code:

```text
/plugin marketplace add anthropics/knowledge-work-plugins
/plugin install bio-research@knowledge-work-plugins
```

### Codex

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/nextflow-development ~/.agents/skills/nextflow-development
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development

### Antigravity

In Antigravity: Copy the nextflow-development folder into ~/.gemini/config/skills (Antigravity app and IDE) or ~/.gemini/antigravity-cli/skills (Antigravity CLI).

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development

### Gemini CLI

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/nextflow-development ~/.gemini/skills/nextflow-development
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development

### Replit

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/nextflow-development .agents/skills/nextflow-development
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development

### OpenClaw

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/nextflow-development ~/.openclaw/skills/nextflow-development
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development

### OpenCode

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/nextflow-development ~/.config/opencode/skills/nextflow-development
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development

### Hermes Agent

Run in your terminal:

```shell
npx -y degit anthropics/knowledge-work-plugins/bio-research/skills/nextflow-development ~/.hermes/skills/nextflow-development
```

View the folder on GitHub: https://github.com/anthropics/knowledge-work-plugins/tree/HEAD/bio-research/skills/nextflow-development

---
From Pluginboard (https://pluginboard.ai).